codelink

DOI: 10.18129/B9.bioc.codelink    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see codelink.

Manipulation of Codelink microarray data

Bioconductor version: 3.8

This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("codelink")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("codelink")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("codelink")

 

PDF R Script Codelink Intruction
PDF R Script Codelink Legacy
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Microarray, OneChannel, Preprocessing, Software
Version 1.50.0
In Bioconductor since BioC 1.8 (R-2.3) (13 years)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.3.2), methods, Biobase(>= 2.17.8), limma
Imports annotate
LinkingTo
Suggests genefilter, parallel, knitr
SystemRequirements
Enhances
URL https://github.com/ddiez/codelink
BugReports https://github.com/ddiez/codelink/issues
Depends On Me
Imports Me
Suggests Me AgiMicroRna, MAQCsubset
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package codelink_1.50.0.tar.gz
Windows Binary codelink_1.50.0.zip
Mac OS X 10.11 (El Capitan) codelink_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/codelink
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/codelink
Package Short Url http://bioconductor.org/packages/codelink/
Package Downloads Report Download Stats

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