TransView

DOI: 10.18129/B9.bioc.TransView    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: 3.8

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

 

PDF R Script An introduction to TransView
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.26.1
In Bioconductor since BioC 2.11 (R-2.15) (6.5 years)
License GPL-3
Depends methods, GenomicRanges
Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, Rsamtools(>= 1.19.38), zlibbioc, gplots
LinkingTo Rsamtools
Suggests RUnit, pasillaBamSubset, BiocManager
SystemRequirements
Enhances
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransView_1.26.1.tar.gz
Windows Binary TransView_1.26.1.zip
Mac OS X 10.11 (El Capitan) TransView_1.26.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransView
Package Short Url http://bioconductor.org/packages/TransView/
Package Downloads Report Download Stats

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