MDTS

DOI: 10.18129/B9.bioc.MDTS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MDTS.

Detection of de novo deletion in targeted sequencing trios

Bioconductor version: 3.8

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MDTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDTS")

 

HTML R Script Title of your vignette
PDF   Reference Manual

Details

biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version 1.2.0
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
LinkingTo
Suggests testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MDTS_1.2.0.tar.gz
Windows Binary MDTS_1.2.0.zip
Mac OS X 10.11 (El Capitan) MDTS_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MDTS
Package Short Url http://bioconductor.org/packages/MDTS/
Package Downloads Report Download Stats

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