GraphAlignment

DOI: 10.18129/B9.bioc.GraphAlignment    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GraphAlignment.

GraphAlignment

Bioconductor version: 3.8

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

Citation (from within R, enter citation("GraphAlignment")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GraphAlignment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GraphAlignment")

 

PDF R Script GraphAlignment
PDF   Reference Manual
Text   LICENSE

Details

biocViews GraphAndNetwork, Network, Software
Version 1.46.0
In Bioconductor since BioC 2.2 (R-2.7) (11 years)
License file LICENSE
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GraphAlignment_1.46.0.tar.gz
Windows Binary GraphAlignment_1.46.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GraphAlignment_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GraphAlignment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GraphAlignment
Package Short Url http://bioconductor.org/packages/GraphAlignment/
Package Downloads Report Download Stats

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