formatTopGO {OmaDB}R Documentation

Format the GO annotations data

Description

The function to create a list of GO annotations that is compatible with topGO from protein objects in roma

Usage

formatTopGO(geneList, format)

Arguments

geneList

the list of roma protein objects to be included in the analysis - this is where the GO annotations are extracted from

format

format for the data to be returned in - either 'GO2geneID' or 'geneID2GO'

Value

a list containing the GO2geneID or geneID2GO information

Examples

geneList = list(getData(type="protein",id="YEAST01"),getData(type="protein",id="YEAST03"))
annotations = formatTopGO(geneList,format="geneID2GO")

[Package OmaDB version 1.2.2 Index]