alignRsubread |
A wrapper to 'Rsubread' read alignment function 'align' |
bamExample |
Example GAlignments Object |
barcodeExample |
A vector of example cell barcodes. |
countUMI |
Count the number of UMIs for each gene and output count matrix |
demultiplex |
Demultiplex cell barcodes and assign cell specific reads |
gview |
Visualize gene isoforms |
qcplots |
Visualize data quality |
rview |
Visualize aligned reads |
sceExample |
Example SingleCellExperiment Object |
scruff |
Run scruff pipeline |
tenxBamqc |
Generate and output 10X read alignment data quality metrics |
validCb |
Cell barcode whitelist (737K-august-2016.txt) |