## ---- echo = FALSE, warning = FALSE---------------------------------------- suppressPackageStartupMessages({ library(MultiAssayExperiment) library(curatedTCGAData) }) ## ---- eval=FALSE----------------------------------------------------------- # source("https://bioconductor.org/biocLite.R") # BiocInstaller::biocLite("curatedTCGAData") ## ---- eval = FALSE--------------------------------------------------------- # library(curatedTCGAData) # library(MultiAssayExperiment) ## -------------------------------------------------------------------------- curatedTCGAData(diseaseCode = "*", assays = "*", dry.run = TRUE) ## -------------------------------------------------------------------------- curatedTCGAData(diseaseCode = "COAD", assays = "RPPA*", dry.run = TRUE) ## ---- message=FALSE-------------------------------------------------------- gbm <- curatedTCGAData("GBM", "RPPA*", FALSE) gbm ## -------------------------------------------------------------------------- head(metadata(colData(gbm))[["subtypes"]])