CHANGES in VERSION 1.11.1 * save regions in gzip file then submit to GREAT * will not change the content of the input regions CHANGES in VERSION 1.9.1 * change url according to changes on GREAT website ----------------------------------------------------- CHANGES in VERSION 1.7.1 * submitGreatJob(): remove additional column by pintersect() ----------------------------------------------------- CHANGES in VERSION 1.5.3 * if background is provided, input regions are automaticially adjusted to make sure all input regions are subset of backgrounds. ------------------------------------------------------ CHANGES in VERSION 1.3.3 * documentations were improved. * test files are moved to tests/testthat -------------------------------------------------------- CHANGES in VERSION 1.3.2 * bug fixed when background is self-provided. -------------------------------------------------------- CHANGES in VERSION 1.3.1 * fixed a bug when gene symbol annotated by GREAT is '' * print warnings when GREAT gives warnings -------------------------------------------------------- CHANGES in VERSION 1.1.6 * versions of GREAT can be selected -------------------------------------------------------- CHANGES in VERSION 1.1.5 * minor changes in documentations --------------------------------------------------------- CHANGES in VERSION 1.1.4 * minor changes to adjust to github mirror ---------------------------------------------------------- CHANGES in VERSION 1.1.3 * error message is extract from GREAT now. * default value of `bgChoice` depeneds on `gr` ----------------------------------------------------------- CHANGES in VERSION 1.1.2 * add dependency to base packages ----------------------------------------------------------- CHANGES in VERSION 1.1.1 * enrivonment for the slots in `GreatJob` object are initialized inside `submitGreatJob` ----------------------------------------------------------- CHANGES IN VERSION 0.99.5 * because analysis depends on internet connection, jump to next version to enforce rebuilding of the vignette on bioconductor. ------------------------------------------------------------ CHANGES IN VERSION 0.99.4 * retrieve categories and corresponding ontologies from GREAT ------------------------------------------------------------