CHANGES IN 1.9.3 ----------------------- * Namespace fixes for base R packages to alleviate build errors * Updated findOverlap calls to use the new drop.self & drop.redundant args CHANGES IN 1.9.1 ----------------------- * Using readxl to import sampleInfo excel file * Minor code improvements for merging internal objects and cleaning data * Removed parameter interactive in read.SeqFolder in favor of base::interactive() * findOverlap calls updated to use ignoreRedundant & ignoreSelf * splitSeqsToFiles receives outDir parameter CHANGES IN 1.4.0 ----------------------- * Using dplyr for small computations CHANGES IN 1.1.3 ----------------------- * Modified all bplapply calls * Moved BiocGenerics and rSFFreader to Imports CHANGES IN 0.99.0 ----------------------- * Added examples for almost all functions * Removed Subread support CHANGES IN 0.3.35 ----------------------- * Added annotateSites CHANGES IN 0.3.34 ----------------------- * Bug fix dereplicateReads & write.psl