phenoDist

DOI: 10.18129/B9.bioc.phenoDist    

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see phenoDist.

Phenotypic distance measures

Bioconductor version: 3.7

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros

Maintainer: Xian Zhang <xianzhang at gmail.com>

Citation (from within R, enter citation("phenoDist")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenoDist")

 

PDF R Script Introduction to phenoDist
PDF   Reference Manual

Details

biocViews CellBasedAssays, Software
Version 1.27.0
In Bioconductor since BioC 2.8 (R-2.13) (7.5 years)
License LGPL-2.1
Depends R (>= 2.9.0), imageHTS, e1071
Imports
LinkingTo
Suggests GOstats, MASS
SystemRequirements
Enhances
URL http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phenoDist_1.27.0.tar.gz
Windows Binary phenoDist_1.27.0.zip
Mac OS X 10.11 (El Capitan) phenoDist_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/phenoDist
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/phenoDist
Package Short Url http://bioconductor.org/packages/phenoDist/
Package Downloads Report Download Stats

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