iSeq

DOI: 10.18129/B9.bioc.iSeq    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: 3.7

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

Citation (from within R, enter citation("iSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF R Script iSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 2.7 (R-2.12) (8 years)
License GPL (>= 2)
Depends R (>= 2.10.0)
Imports
LinkingTo
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Enhances
URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSeq_1.32.0.tar.gz
Windows Binary iSeq_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) iSeq_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSeq
Package Short Url http://bioconductor.org/packages/iSeq/
Package Downloads Report Download Stats

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