chroGPS

DOI: 10.18129/B9.bioc.chroGPS    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see chroGPS.

Visualizing the epigenome

Bioconductor version: 3.7

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

Citation (from within R, enter citation("chroGPS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chroGPS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chroGPS")

 

PDF R Script Manual for the chroGPS library
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License GPL (>=2.14)
Depends R (>= 3.1.0), GenomicRanges, methods, Biobase, MASS, graphics, stats, changepoint
Imports cluster, DPpackage, ICSNP
LinkingTo
Suggests
SystemRequirements
Enhances parallel, XML, rgl
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chroGPS_1.28.0.tar.gz
Windows Binary chroGPS_1.28.0.zip
Mac OS X 10.11 (El Capitan) chroGPS_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chroGPS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chroGPS
Package Short Url http://bioconductor.org/packages/chroGPS/
Package Downloads Report Download Stats

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