DOI: 10.18129/B9.bioc.beachmat    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: 3.7

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at>

Citation (from within R, enter citation("beachmat")):


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HTML R Script Linking to beachmat with C++ code from another package
HTML R Script Using beachmat to read data from R matrices in C++
HTML R Script Using beachmat to write data into R matrix objects
HTML R Script Using beachmat's helper functions in R
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.2.1
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14)
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me DropletUtils, scater, scran
Links To Me DropletUtils, scater, scran
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Source Package beachmat_1.2.1.tar.gz
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Mac OS X 10.11 (El Capitan) beachmat_1.2.1.tgz
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