DOI: 10.18129/B9.bioc.Scale4C    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Scale4C.

Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data

Bioconductor version: 3.7

Scale4C is an R/Bioconductor package for scale-space transformation and visualization of 4C-seq data. The scale-space transformation is a multi-scale visualization technique to transform a 2D signal (e.g. 4C-seq reads on a genomic interval of choice) into a tesselation in the scale space (2D, genomic position x scale factor) by applying different smoothing kernels (Gauss, with increasing sigma). This transformation allows for explorative analysis and comparisons of the data's structure with other samples.

Author: Carolin Walter

Maintainer: Carolin Walter < at>

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biocViews Coverage, DataImport, QualityControl, Sequencing, Software, Visualization
Version 1.2.0
License LGPL-3
Depends R (>= 3.4), smoothie, GenomicRanges, IRanges, SummarizedExperiment
Imports methods, grDevices, graphics, utils
Depends On Me
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