DOI: 10.18129/B9.bioc.RnaSeqSampleSize    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RnaSeqSampleSize.


Bioconductor version: 3.7

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Citation (from within R, enter citation("RnaSeqSampleSize")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script RnaSeqSampleSize: Sample size estimation by real data
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software
Version 1.12.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL (>= 2)
Depends R (>= 2.10), RnaSeqSampleSizeData
Imports biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo Rcpp
Suggests BiocStyle, knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RnaSeqSampleSize_1.12.0.tar.gz
Windows Binary RnaSeqSampleSize_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) RnaSeqSampleSize_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RnaSeqSampleSize
Package Short Url http://bioconductor.org/packages/RnaSeqSampleSize/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: