OrderedList

DOI: 10.18129/B9.bioc.OrderedList    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see OrderedList.

Similarities of Ordered Gene Lists

Bioconductor version: 3.7

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("OrderedList")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OrderedList")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OrderedList")

 

PDF R Script Similarities of Ordered Gene Lists
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.52.0
In Bioconductor since BioC 1.8 (R-2.3) (12.5 years)
License GPL (>= 2)
Depends R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports Biobase, graphics, methods, stats, twilight
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URL http://compdiag.molgen.mpg.de/software/index.shtml
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OrderedList_1.52.0.tar.gz
Windows Binary OrderedList_1.52.0.zip
Mac OS X 10.11 (El Capitan) OrderedList_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OrderedList
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OrderedList
Package Short Url http://bioconductor.org/packages/OrderedList/
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