DOI: 10.18129/B9.bioc.ImmuneSpaceR    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ImmuneSpaceR.

A Thin Wrapper around the ImmuneSpace Database

Bioconductor version: 3.7

Provides a convenient API for accessing data sets within ImmuneSpace (, the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Lauren Wolfe [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at>

Citation (from within R, enter citation("ImmuneSpaceR")):


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HTML R Script An Introduction to the ImmuneSpaceR Package
HTML R Script Downloading Datasets with getDataset
HTML R Script Handling Expression Matrices with ImmuneSpaceR
HTML R Script SDY144: Correlation of HAI/Virus Neutralizition Titer and Cell Counts
HTML R Script SDY180: Abundance of Plasmablasts Measured by Multiparameter Flow Cytometry
HTML R Script SDY269: Correlating HAI with Flow Cytometry and ELISPOT Results
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.8.2
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL-2
Imports utils, R6, data.table, curl, httr, Rlabkey (>= 2.1.136), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown, preprocessCore, parallel
Suggests knitr, testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
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