densityPlotD_HC {DAPAR}R Documentation

Builds a densityplot from a dataframe

Description

Densityplot of quantitative proteomics data over samples. Same as the function densityPlotD but uses the package highcharter

Usage

densityPlotD_HC(qData, labelsForLegend = NULL, indData2Show = NULL,
  group2Color = "Condition")

Arguments

qData

A dataframe that contains quantitative data.

labelsForLegend

A vector of the conditions (labels) (one label per sample).

indData2Show

A vector of indices to show in densityplot. If NULL, then all labels are displayed.

group2Color

A string that indicates how to color the replicates: one color per condition (value "Condition") or one color per replicate (value "Replicate"). Default value is by Condition.

Value

A density plot

Author(s)

Samuel Wieczorek

See Also

boxPlotD, CVDistD

Examples

require(DAPARdata)
data(Exp1_R25_pept)
qData <- Biobase::exprs(Exp1_R25_pept)
labels <- lab2Show <- Biobase::pData(Exp1_R25_pept)[,"Label"]
densityPlotD_HC(qData, labels)

[Package DAPAR version 1.12.11 Index]