buildKNNGraph | Build a nearest-neighbor graph |
buildKNNGraph-method | Build a nearest-neighbor graph |
buildSNNGraph | Build a nearest-neighbor graph |
buildSNNGraph-method | Build a nearest-neighbor graph |
clusterModularity | Compute the cluster-wise modularity |
combineVar | Combine variance decompositions |
computeSpikeFactors | Normalization with spike-in counts |
computeSpikeFactors-method | Normalization with spike-in counts |
computeSumFactors | Normalization by deconvolution |
computeSumFactors-method | Normalization by deconvolution |
convertTo | Convert to other classes |
convertTo-method | Convert to other classes |
correlateNull | Test for significant correlations |
correlatePairs | Test for significant correlations |
correlatePairs-method | Test for significant correlations |
cyclone | Cell cycle phase classification |
cyclone-method | Cell cycle phase classification |
decomposeVar | Decompose the gene-level variance |
decomposeVar-method | Decompose the gene-level variance |
denoisePCA | Denoise expression with PCA |
denoisePCA-method | Denoise expression with PCA |
DM | Compute the distance-to-median statistic |
exploreData | Shiny app for explorative data analysis |
findMarkers | Find marker genes |
findMarkers-method | Find marker genes |
improvedCV2 | Stably model the technical coefficient of variation |
improvedCV2-method | Stably model the technical coefficient of variation |
makeTechTrend | Make a technical trend |
mnnCorrect | Mutual nearest neighbors correction |
multiBlockVar | Per-block variance statistics |
overlapExprs | Overlap expression profiles |
overlapExprs-method | Overlap expression profiles |
parallelPCA | Parallel analysis for PCA |
parallelPCA-method | Parallel analysis for PCA |
quickCluster | Quick clustering of cells |
quickCluster-method | Quick clustering of cells |
sandbag | Cell cycle phase training |
sandbag-method | Cell cycle phase training |
selectorPlot | Construct a selector plot via Shiny |
technicalCV2 | Model the technical coefficient of variation |
technicalCV2-method | Model the technical coefficient of variation |
testVar | Test for significantly large variances |
trendVar | Fit a variance trend |
trendVar-method | Fit a variance trend |