advanced | VEPParam objects |
advanced-method | VEPParam objects |
advanced<- | VEPParam objects |
advanced<--method | VEPParam objects |
advancedOpts | VEPParam objects |
basic | VEPParam objects |
basic-method | VEPParam objects |
basic<- | VEPParam objects |
basic<--method | VEPParam objects |
basicOpts | VEPParam objects |
cache | VEPParam objects |
cache-method | VEPParam objects |
cache<- | VEPParam objects |
cache<--method | VEPParam objects |
cacheOpts | VEPParam objects |
class:VEPFlags | VEPFlag objects |
class:VEPParam | VEPParam objects |
class:VEPParam67 | VEPParam objects |
class:VEPParam73 | VEPParam objects |
class:VEPParam75 | VEPParam objects |
class:VEPParam77 | VEPParam objects |
class:VEPParam78 | VEPParam objects |
class:VEPParam82 | VEPParam objects |
class:VEPParam88 | VEPParam objects |
colocatedVariants | VEPParam objects |
colocatedVariants-method | VEPParam objects |
colocatedVariants<- | VEPParam objects |
colocatedVariants<--method | VEPParam objects |
colocatedVariantsOpts | VEPParam objects |
currentVEP | VEPFlag objects |
database | VEPParam objects |
database-method | VEPParam objects |
database<- | VEPParam objects |
database<--method | VEPParam objects |
databaseOpts | VEPParam objects |
dataformat | VEPParam objects |
dataformat-method | VEPParam objects |
dataformat<- | VEPParam objects |
dataformat<--method | VEPParam objects |
dataformatOpts | VEPParam objects |
ensemblVEP | Query Ensembl Variant Effect Predictor |
ensemblVEP-method | Query Ensembl Variant Effect Predictor |
filterqc | VEPParam objects |
filterqc-method | VEPParam objects |
filterqc<- | VEPParam objects |
filterqc<--method | VEPParam objects |
filterqcOpts | VEPParam objects |
flagOpts | VEPFlag objects |
flags | VEPFlag objects |
flags-method | VEPFlag objects |
flags<- | VEPFlag objects |
flags<--method | VEPFlag objects |
identifier | VEPParam objects |
identifier-method | VEPParam objects |
identifier<- | VEPParam objects |
identifier<--method | VEPParam objects |
identifierOpts | VEPParam objects |
input | VEPParam objects |
input-method | VEPParam objects |
input<- | VEPParam objects |
input<--method | VEPParam objects |
inputOpts | VEPParam objects |
oldRuntimeOptions | VEPParam runtime options |
output | VEPParam objects |
output-method | VEPParam objects |
output<- | VEPParam objects |
output<--method | VEPParam objects |
outputOpts | VEPParam objects |
parseCSQToGRanges | Parse the CSQ column of a VCF object into a GRanges object |
parseCSQToGRanges-method | Parse the CSQ column of a VCF object into a GRanges object |
runtimeOptions | VEPParam runtime options |
scriptPath | VEPParam objects |
scriptPath<- | VEPParam objects |
show-method | VEPFlag objects |
show-method | VEPParam objects |
supportedVEP | VEPFlag objects |
VEPFlags | VEPFlag objects |
VEPFlags-class | VEPFlag objects |
VEPParam | VEPParam objects |
VEPParam-class | VEPParam objects |
VEPParam67-class | VEPParam objects |
VEPParam73-class | VEPParam objects |
VEPParam75-class | VEPParam objects |
VEPParam77-class | VEPParam objects |
VEPParam78-class | VEPParam objects |
VEPParam82-class | VEPParam objects |
VEPParam88-class | VEPParam objects |
version | VEPParam objects |
version<- | VEPParam objects |