FDb.FANTOM4.promoters.hg19

DOI: 10.18129/B9.bioc.FDb.FANTOM4.promoters.hg19    

Annotation package for FANTOM4 promoters identified from THP-1 cells

Bioconductor version: Release (3.6)

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Citation (from within R, enter citation("FDb.FANTOM4.promoters.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FDb.FANTOM4.promoters.hg19")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Homo_sapiens
Version 1.0.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.7.22), Biostrings
Imports GenomicFeatures, AnnotationDbi
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
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