## ----style-knitr, eval=TRUE, echo=FALSE, results='asis'-------------------- BiocStyle::latex() ## ----opts, include=FALSE, echo=FALSE--------------------------------------- knitr::opts_chunk$set(concordance=TRUE, eval = TRUE, cache = TRUE, resize.width="0.45\\textwidth", fig.align='center', tidy = FALSE, message=FALSE) ## ----package--------------------------------------------------------------- library("TPP") ## ----load_tr_data---------------------------------------------------------- data("hdacTR_smallExample") ## ----result_path_TR-------------------------------------------------------- resultPath = file.path(getwd(), 'NPARC_Vignette_Example') ## ----analyzeTR, eval = TRUE------------------------------------------------ TRresults <- analyzeTPPTR(configTable = hdacTR_config, data = hdacTR_data, method = "splinefit", nCores = 2, resultPath = resultPath, plotCurves = FALSE)