Changes in version 1.0.6 (2017-12-18): o Now the id conversion can also be done by using the bioconductor annotation package, when biomart fails to connect. Changes in version 1.0.5 (2017-12-14): o Fixed bugs in slim report and trimbarcode error message o Fix incomplete error message o Documentation updates, new functions and bug fixes Changes in version 1.0.4 (2017-12-04): o In `detect_outlier`, give more informative error message when some cells or QC metrics have zero values. Changes in version 1.0.3 (2017-12-03): o fix a bug in `validObject`. the default value for gene id and organism is set to NA Changes in version 1.0.2 (2017-12-01): o fix errors in unittest Changes in version 1.0.1 (2017-11-28): o Bug Fix: Fixed handling of colData through QC_metrics (https://github.com/LuyiTian/scPipe/issues/34) Changes in version 0.99.20 (2017-09-22): o scPipe now supports SingleCellExperiment class and use it as the base class o add two functions `plot_demultiplex` and `plot_UMI_dup` o scPipe support the offical bam tags for cell barcode and UMI Changes in version 0.99.0 (2017-07-28): o Package prepared for Bioconductor submission.