0.99.0: This is the submitted version of the package. 0.99.1: Changes done based on suggestions from the reviewer. 0.99.2: Added Parents_query_archive.rda and Parents_Names.rda to save time querying by already having a pre-loaded archive. 0.99.3: Minor changes with the unit test and RECOMMENDED comments from BiocCheck. 1.0.0: Same as previous. Bumped by BioConductor. 1.1.0: Same as previous. Bumped by BioConductor. 1.2.0: Added hi/high/bri/bright and lo/low/dim as inputs. Added warning messages for incorrect input. 1.3.0: Added a scoring system. Returns all markers that were not queried for each high ranked cell label. Archive is larger, and loaded in a more automatic way. 1.3.1: Fixed a Note and a Warning. Added comments. 1.3.2: Extended archive. Removes cell labels that have contradicting tags as input. 1.4.0: Same as previous. Bumped by BioConductor. 1.5.0: Same as previous. Bumped by BioConductor. 1.5.1: Explanded on one marker queries. Uses sesame to find direct sub classes only. 1.9.1: Fixed two bugs. 1.11.1: Fixed one bug involving has_pmp: that occured with the updated ontology. Fixed bug where tag wasn't showing for markers in the (C) category of $Markers. Updated data file and vignette. Fixed bug where a direct query to the markers is no longer needed because of the change in the ontology. Changed CompInfo to Verbose to be more consistent with other packages. 1.11.2: Small bug with R version 3.3.X when using cbind. 1.12.0: Same as previous. Bumped by BioConductor. 1.13.0: Same as previous. Bumped by BioConductor. 1.14.0: Same as previous. Bumped by BioConductor. 1.15.0: Same as previous. Bumped by BioConductor. 1.16.0: Same as previous. Bumped by BioConductor. 1.16.1: Ontology has @en attachement to symbolize an english language addition. flowCL was updated to handle this addition.