CHANGES IN VERSION 1.50.0 ---------------------------- Significant user-visible changes Converted runRomer and outputRomer to S4, in the process re-factoring they now accept either an ExpressionSet and MArrayLM object (for Affymetrix microarray analyses), a DGEList and DGEGLM object (for RNA-Seq analysis using edgeR) or an EList and MArrayLM object (for either Agilent one-color microarray analysis or limma-voom RNA-Seq analysis). affycoretools v1.43.1 ===================== Changes: Added new functionality to automatically annotate ExpressionSets, using either ChipDb (e.g., hugene10sttranscriptcluster.db) packages, pdInfo (e.g., pd.hugene.1.0.v1) packages, or user-supplied data.frames.