viper

DOI: 10.18129/B9.bioc.viper    

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Release (3.6)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

 

PDF R Script Using VIPER
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.12.0
In Bioconductor since BioC 2.14 (R-3.1) (4 years)
License file LICENSE
Depends R (>= 2.14.0), Biobase, methods
Imports mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests bcellViper
SystemRequirements
Enhances
URL
Depends On Me aracne.networks, vulcan
Imports Me diggit, diggitdata
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package viper_1.12.0.tar.gz
Windows Binary viper_1.12.0.zip
Mac OS X 10.11 (El Capitan) viper_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/viper
Package Short Url http://bioconductor.org/packages/viper/
Package Downloads Report Download Stats

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