DOI: 10.18129/B9.bioc.oposSOM    

Comprehensive analysis of transciptome data

Bioconductor version: Release (3.6)

This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.

Author: Henry Loeffler-Wirth <wirth at izbi.uni-leipzig.de> and Martin Kalcher <mkalcher at porkbox.net>

Maintainer: Henry Loeffler-Wirth <wirth at izbi.uni-leipzig.de>

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PDF R Script The oposSOM users guide
PDF   Reference Manual
Text   NEWS


biocViews DataRepresentation, DifferentialExpression, GeneExpression, GeneSetEnrichment, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (3.5 years)
License GPL (>=2)
Depends R (>= 3.0), igraph (>= 1.0.0)
Imports som, fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape, biomaRt, Biobase, arules
URL http://som.izbi.uni-leipzig.de
Depends On Me
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Source Package oposSOM_1.16.0.tar.gz
Windows Binary oposSOM_1.16.0.zip
Mac OS X 10.11 (El Capitan) oposSOM_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oposSOM
Package Short Url http://bioconductor.org/packages/oposSOM/
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