DOI: 10.18129/B9.bioc.openCyto    

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Release (3.6)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at>

Citation (from within R, enter citation("openCyto")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script An Introduction to the openCyto package
HTML R Script How to use different auto gating functions
HTML R Script How to write a csv gating template
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.16.1
In Bioconductor since BioC 2.13 (R-3.0) (4.5 years)
License Artistic-2.0
Depends flowWorkspace(>= 3.17.43)
Imports methods, Biobase, gtools, flowCore(>= 1.31.17), flowViz, ncdfFlow(>= 2.11.34), flowWorkspace, flowStats(>= 3.29.1), flowClust(>= 3.11.4), MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
LinkingTo Rcpp
Suggests flowWorkspaceData, knitr, testthat, utils, tools, parallel, ggcyto
Depends On Me
Imports Me CytoML
Suggests Me flowCore, ggcyto
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package openCyto_1.16.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) openCyto_1.16.1.tgz
Source Repository git clone
Package Short Url
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Old Source Packages for BioC 3.6 Source Archive

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