DOI: 10.18129/B9.bioc.ontoProc    

processing of ontologies of anatomy, cell lines, and so on

Bioconductor version: Release (3.6)

Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

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PDF R Script ontoProc: RDF ontology processing
PDF   Reference Manual
Text   NEWS


biocViews GO, Infrastructure, Software
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.4), ontologyIndex
Imports Biobase, S4Vectors, methods, AnnotationDbi, stats, utils, shiny
Suggests knitr, org.Hs.eg.db, org.Mm.eg.db, testthat
Depends On Me
Imports Me tenXplore
Suggests Me
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Source Package ontoProc_1.0.0.tar.gz
Windows Binary ontoProc_1.0.0.zip
Mac OS X 10.11 (El Capitan) ontoProc_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ontoProc
Package Short Url http://bioconductor.org/packages/ontoProc/
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