ibh

DOI: 10.18129/B9.bioc.ibh    

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Release (3.6)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ibh")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ibh")

 

PDF R Script ibh
PDF   Reference Manual

Details

biocViews DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version 1.26.0
In Bioconductor since BioC 2.8 (R-2.13) (7 years)
License GPL (>= 2)
Depends simpIntLists
Imports
LinkingTo
Suggests yeastCC, stats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ibh_1.26.0.tar.gz
Windows Binary ibh_1.26.0.zip
Mac OS X 10.11 (El Capitan) ibh_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ibh
Package Short Url http://bioconductor.org/packages/ibh/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: