gaga

DOI: 10.18129/B9.bioc.gaga    

GaGa hierarchical model for high-throughput data analysis

Bioconductor version: Release (3.6)

Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).

Author: David Rossell <rosselldavid at gmail.com>.

Maintainer: David Rossell <rosselldavid at gmail.com>

Citation (from within R, enter citation("gaga")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaga")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaga")

 

PDF R Script Manual for the gaga library
PDF   Reference Manual

Details

biocViews Classification, DifferentialExpression, MassSpectrometry, MultipleComparison, OneChannel, Software
Version 2.24.0
In Bioconductor since BioC 2.2 (R-2.7) (10 years)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase, coda, EBarrays, mgcv
Imports
LinkingTo
Suggests
SystemRequirements
Enhances parallel
URL
Depends On Me
Imports Me casper
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gaga_2.24.0.tar.gz
Windows Binary gaga_2.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) gaga_2.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gaga
Package Short Url http://bioconductor.org/packages/gaga/
Package Downloads Report Download Stats

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