eiR

DOI: 10.18129/B9.bioc.eiR    

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.6)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eiR")

Documentation

HTML R Script eiR
PDF   Reference Manual
Text   NEWS
Text   INSTALL
Text   LICENSE

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 2.12 (R-3.0) (5 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, gespeR, RcppAnnoy (>= 0.0.9)
LinkingTo
Suggests BiocStyle, knitcitations, knitr, knitrBootstrap
SystemRequirements
Enhances
URL https://github.com/girke-lab/eiR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eiR_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) eiR_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eiR
Package Short Url http://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats

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