DOI: 10.18129/B9.bioc.cytofkit    

cytofkit: an integrated mass cytometry data analysis pipeline

Bioconductor version: Release (3.6)

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.

Author: Jinmiao Chen, Hao Chen, Matthew Myint

Maintainer: Jinmiao Chen <Chen_Jinmiao at>, Hao Chen <haoeric at>, Matthew Myint <a0124008 at>

Citation (from within R, enter citation("cytofkit")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script Analysis Pipeline
HTML R Script Quick Start
HTML R Script ShinyAPP tutorial
PDF   Reference Manual
Text   NEWS


biocViews BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, FlowCytometry, GUI, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License Artistic-2.0
Depends R (>= 3.4.0), ggplot2, plyr
Imports tcltk, grDevices, graphics, utils, stats, Rtsne, e1071, flowCore, gplots, colourpicker, VGAM, reshape2, ggrepel, shiny, shinyFiles, vegan, Biobase, doParallel, parallel, pdist, methods, destiny, FlowSOM(>= 1.4.0), igraph (>= 1.1.2), RANN (>= 2.5), Rcpp (>= 0.12.0)
LinkingTo Rcpp
Suggests knitr, RUnit, testthat, BiocGenerics
Depends On Me
Imports Me
Suggests Me
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Source Package cytofkit_1.10.0.tar.gz
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Mac OS X 10.11 (El Capitan) cytofkit_1.10.0.tgz
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