DOI: 10.18129/B9.bioc.SPONGE    

Sparse Partial Correlations On Gene Expression

Bioconductor version: Release (3.6)

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.

Author: Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz

Maintainer: Markus List <markus.list at mpi-inf.mpg.de>

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biocViews GeneExpression, GeneRegulation, NetworkInference, Regression, Software, SystemsBiology, Transcription, Transcriptomics
Version 1.0.3
License GPL (>=3)
Depends R (>= 3.4)
Imports Biobase, stats, ppcor, logging, foreach, doRNG, data.table, bigmemory, MASS, expm, gRbase, glmnet, igraph, iterators
Suggests testthat, knitr, rmarkdown, visNetwork, ggplot2, ggrepel, gridExtra, digest, doParallel
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Source Package SPONGE_1.0.3.tar.gz
Windows Binary SPONGE_1.0.3.zip
Mac OS X 10.11 (El Capitan) SPONGE_1.0.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/SPONGE
Package Short Url http://bioconductor.org/packages/SPONGE/
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