DOI: 10.18129/B9.bioc.RTNduals    

Analysis of co-regulatory network motifs and inference of 'dual regulons'

Bioconductor version: Release (3.6)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulon pairs agree on the predicted downstream effects.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Vinicius Chagas <chagas.vis at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>, Mauro Castro <mauro.castro at ufpr.br>

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biocViews GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version 1.2.0
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License Artistic-2.0
Depends R (>= 3.3.3), methods, RTN(>= 1.15.6)
Imports graphics, grDevices, stats, utils
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Depends On Me
Imports Me RTNsurvival
Suggests Me
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Source Package RTNduals_1.2.0.tar.gz
Windows Binary RTNduals_1.2.0.zip
Mac OS X 10.11 (El Capitan) RTNduals_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTNduals
Package Short Url http://bioconductor.org/packages/RTNduals/
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