RCytoscape

DOI: 10.18129/B9.bioc.RCytoscape    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Display and manipulate graphs in Cytoscape

Bioconductor version: Release (3.6)

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCytoscape")

 

PDF	R Script	RCytoscape Overview
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	1.27.1
In Bioconductor since	BioC 2.7 (R-2.12) (7.5 years)
License	GPL-2
Depends	R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports	methods, XMLRPC, BiocGenerics
LinkingTo
Suggests	RUnit
SystemRequirements
Enhances
URL	http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me	RamiGO
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RCytoscape_1.27.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/RCytoscape
Package Short Url	http://bioconductor.org/packages/RCytoscape/
Package Downloads Report	Download Stats