Organism.dplyr

DOI: 10.18129/B9.bioc.Organism.dplyr    

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: Release (3.6)

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Yubo Cheng [ctb]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Organism.dplyr")

Documentation

HTML	R Script	Organism.dplyr
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, GenomeAnnotation, Sequencing, Software
Version	1.6.2
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3)
Imports	RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, methods, tools, utils, BiocFileCache, DBI, dbplyr
LinkingTo
Suggests	org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Organism.dplyr_1.6.2.tar.gz
Windows Binary	Organism.dplyr_1.6.2.zip
Mac OS X 10.11 (El Capitan)	Organism.dplyr_1.6.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Organism.dplyr
Package Short Url	http://bioconductor.org/packages/Organism.dplyr/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive