MotifDb

DOI: 10.18129/B9.bioc.MotifDb    

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: Release (3.6)

More than 8000 annotated position frequency matrices from 13 public sources, for multiple organisms.

Author: Paul Shannon, Matt Richards

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("MotifDb")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotifDb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

 

PDF R Script %%MotifDb Overview
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MotifAnnotation, Software
Version 1.20.0
In Bioconductor since BioC 2.11 (R-2.15) (5.5 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 2.15.0), methods, BiocGenerics, S4Vectors, IRanges, Biostrings
Imports rtracklayer, splitstackshape
LinkingTo
Suggests RUnit, seqLogo, MotIV
SystemRequirements
Enhances
URL
Depends On Me motifbreakR, trena
Imports Me rTRMui
Suggests Me ATACseqQC, DiffLogo, MMDiff2, motifcounter, motifStack, profileScoreDist, PWMEnrich, rTRM, vtpnet
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MotifDb_1.20.0.tar.gz
Windows Binary MotifDb_1.20.0.zip
Mac OS X 10.11 (El Capitan) MotifDb_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MotifDb
Package Short Url http://bioconductor.org/packages/MotifDb/
Package Downloads Report Download Stats

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