DOI: 10.18129/B9.bioc.InteractionSet    

Base Classes for Storing Genomic Interaction Data

Bioconductor version: Release (3.6)

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Author: Aaron Lun <alun at>, Malcolm Perry <mgperry32 at>, Liz Ing-Simmons < at>

Maintainer: Aaron Lun <alun at>

Citation (from within R, enter citation("InteractionSet")):


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biocViews DataRepresentation, HiC, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License GPL-3
Depends R (>= 3.4), GenomicRanges(>= 1.29.6), SummarizedExperiment(>= 1.1.6)
Imports IRanges, S4Vectors(>= 0.13.13), GenomeInfoDb, BiocGenerics, methods, Matrix, Rcpp
LinkingTo Rcpp
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements C++11
Depends On Me diffHic, GenomicInteractions
Imports Me HiCcompare
Suggests Me
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Source Package InteractionSet_1.6.0.tar.gz
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Mac OS X 10.11 (El Capitan) InteractionSet_1.6.0.tgz
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