GSReg

DOI: 10.18129/B9.bioc.GSReg    

Gene Set Regulation (GS-Reg)

Bioconductor version: Release (3.6)

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSReg")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSReg")

 

PDF	R Script	Working with the GSReg package
PDF		Reference Manual

Details

biocViews	AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL-2
Depends	R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi
Imports
LinkingTo
Suggests	GenomicRanges, GSBenchMark
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSReg_1.12.0.tar.gz
Windows Binary	GSReg_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GSReg_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSReg
Package Short Url	http://bioconductor.org/packages/GSReg/
Package Downloads Report	Download Stats