DOI: 10.18129/B9.bioc.DNABarcodes    

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: Release (3.6)

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Citation (from within R, enter citation("DNABarcodes")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script DNABarcodes
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biocViews Preprocessing, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License GPL-2
Depends Matrix, parallel
Imports Rcpp (>= 0.11.2), BH
LinkingTo Rcpp, BH
Suggests knitr, BiocStyle, rmarkdown
Depends On Me
Imports Me
Suggests Me
Build Report  

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Source Package DNABarcodes_1.8.0.tar.gz
Windows Binary DNABarcodes_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DNABarcodes_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNABarcodes
Package Short Url http://bioconductor.org/packages/DNABarcodes/
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