DOI: 10.18129/B9.bioc.CellNOptR    

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor version: Release (3.6)

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CellNOptR")):


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PDF R Script Main vignette:Playing with networks using CellNOptR
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.24.1
In Bioconductor since BioC 2.9 (R-2.14) (6.5 years)
License GPL-3
Depends R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz, XML
Suggests RUnit, BiocGenerics, igraph
SystemRequirements Graphviz version >= 2.2
Depends On Me CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me MEIGOR
Build Report  

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Source Package CellNOptR_1.24.1.tar.gz
Windows Binary CellNOptR_1.24.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CellNOptR_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/CellNOptR
Package Short Url http://bioconductor.org/packages/CellNOptR/
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Old Source Packages for BioC 3.6 Source Archive

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