significants {DEGreport} | R Documentation |
Function to get the features that are significant according to some thresholds from a DEGSet, DESeq2::DESeqResults and edgeR::topTags.
significants(object, ...) ## S4 method for signature 'DEGSet' significants(object, padj = 0.05, fc = 0, ...) ## S4 method for signature 'DESeqResults' significants(object, padj = 0.05, fc = 0, ...) ## S4 method for signature 'TopTags' significants(object, padj = 0.05, fc = 0, ...)
object |
|
... |
Passed to deg. Default: value = NULL. Value can be 'raw', 'shrunken'. |
padj |
Cutoff for the FDR column. |
fc |
Cutoff for the log2FC column. |
Lorena Pantano