getProteinsStats {DAPAR}R Documentation

computes the number of proteins that are only defined by specific peptides, shared peptides or a mixture of two.

Description

This function computes the number of proteins that are only defined by specific peptides, shared peptides or a mixture of two.

Usage

getProteinsStats(matUnique, matShared)

Arguments

matUnique

The adjacency matrix with only specific peptides.

matShared

The adjacency matrix with both specific and shared peptides.

Value

A list

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
protID <- "Protein.group.IDs"
MShared <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], protID, FALSE)
MUnique <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], protID, TRUE)
getProteinsStats(MUnique,MShared)

[Package DAPAR version 1.10.4 Index]