genotype.saap | SAAP genotype dataset |
genotype.saap.msa | SAAP genotype dataset (msa) |
genotype.snp | SNP genotype dataset |
genotype.snp.msa | SNP genotype dataset (msa) |
phenotype.saap | Phenotype dataset |
phenotype.snp | Phenotype dataset |
plotGenphenBayes | Visualizing the genphen results of runGenphenBayes |
plotGenphenRfSvm | Visualizing the genphen results of runGenphenRf or runGenphenSvm |
plotManhattan | Visualizing genphen results with Manhattan plots |
plotSpecificGenotype | Visualizing specific genotypes |
runGenphenBayes | Conducting genetic association analysis with Bayesian inference, using hierarchical models. |
runGenphenRf | Conducting genetic association analysis with random forest |
runGenphenSvm | Conducting genetic association analysis with linear support vector machines (LSVM) |