### R code from vignette source 'package_vignettes.Snw' ### Encoding: UTF-8 ################################################### ### code chunk number 1: package_vignettes.Snw:29-35 ################################################### dirPath = system.file("extdata", package="HiCDataLymphoblast") fileName1 = list.files(dirPath, full.names=TRUE)[1] fileName2 = list.files(dirPath, full.names=TRUE)[2] library(ShortRead) alignedReads <- readAligned(fileName1, type="Bowtie") alignedReads <- readAligned(fileName2, type="Bowtie")