To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.CNV")

In most cases, you don't need to download the package archive at all.

RTCGA.CNV

 

CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.5)

Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.

Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.CNV")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.CNV")

Documentation

HTML R Script Using RTCGA to download CNV data as included in RTCGA.CNV
HTML R Script Using RTCGA to estimate ratio of MDM2 duplications
PDF   Reference Manual

Details

biocViews AnnotationData, ExperimentData
Version 1.4.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RTCGA.CNV_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.CNV
Package Short Url http://bioconductor.org/packages/RTCGA.CNV/
Package Downloads Report Download Stats

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