To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCHiCdata")

In most cases, you don't need to download the package archive at all.

PCHiCdata

 

   

Promoter Capture Hi-C data

Bioconductor version: Release (3.5)

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Paula Freire-Pritchett <paula.freire-pritchett at babraham.ac.uk>

Citation (from within R, enter citation("PCHiCdata")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCHiCdata")

Documentation

HTML R Script PCHiCdata Vignette
PDF   Reference Manual

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.2), Chicago
Imports
LinkingTo
Suggests testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me Chicago
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PCHiCdata_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/PCHiCdata/
Package Downloads Report Download Stats

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