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## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

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DeSousa2013

DOI: 10.18129/B9.bioc.DeSousa2013    

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Release (3.5)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Citation (from within R, enter citation("DeSousa2013")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

 

PDF R Script Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF   Reference Manual

Details

biocViews CancerData, ColonCancerData, ExperimentData, MicroarrayData
Version 1.12.0
License Artistic-2.0
Depends R (>= 2.15)
Imports affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Package Archives

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Source Package DeSousa2013_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/DeSousa2013
Package Short Url http://bioconductor.org/packages/DeSousa2013/
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