To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")

In most cases, you don't need to download the package archive at all.

TxDb.Hsapiens.UCSC.hg19.knownGene

DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

Annotation package for TxDb object(s)

Bioconductor version: Release (3.5)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.2.2
License Artistic-2.0
Depends GenomicFeatures(>= 1.21.30)
Imports AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens
Imports Me annotatr, ChIPQC, ChIPseeker, RareVariantVis, rCGH
Suggests Me AllelicImbalance, AnnotationDbi, ATACseqQC, beadarray, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, GA4GHclient, gage, geneAttribution, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GoogleGenomics, groHMM, GUIDEseq, HTSeqGenie, InPAS, MAST, methyAnalysis, MutationalPatterns, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
Package Downloads Report Download Stats

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